Practical Data Visualization with Python This repository contains all materials related to a lecture / seminar I teach on practical data visualization with python. What I mean by “practical” is that the materials herein do not focus on one particular library or data visualization method; rather, my goal is to empower the consumer of this content with the tools, heuristics, and methods needed to handle a wide variety of data visualization problems. If you have questions, comments, or suggested alterations […]

QuickPotato A library for the Python programming language that allows for effortless profiling with high-quality visualizations and empowers you to produce a performance angle to test-driven development. QuickPotato is a Python library that aims to make it easier to rapidly profile your software and produce powerful code visualizations that enables you to quickly investigate where potential performance bottlenecks are hidden. Also, QuickPotato is trying to provide you with a path to add an automated performance testing angle to your regular […]

mols2grid mols2grid is an interactive chemical viewer for 2D structures of small molecules, based on RDKit. 🐍 Installation mols2grid was developped for Python 3.6+ and requires rdkit (>=2019.09.1), pandas and jinja2 as dependencies. To install mols2grid from a clean conda environment: conda install -c conda-forge ‘rdkit>=2019.09.1’ pip install mols2grid It is compatible with Jupyter Notebook and Google Colab (Visual Studio notebooks and Jupyterlab are not supported) and can run on Streamlit. 📜 Usage import mols2grid mols2grid.display(“path/to/molecules.sdf”, # RDKit’s MolDrawOptions parameters […]

Scripted visualizations in blender The goal of this project is to script 3D scientific visualizations using blender. To achieve this, we aim to bring together blender’s powerful visualization toolkit with Anaconda’s scientific computing and package management capabilities. For example, the code in ./apps/concepts/fourier_signal_composition.py was used to generate the following visualization. Acknowledgments All the wonderful people that make open source software Inspiration – 3blue1brown’s videos and pedagogical clarity Setup instructions These are detailed instructions that worked for me on a windows […]