Repository for publicly available deep learning models developed in Rosetta community
trRosetta2 This package contains deep learning models and related scripts used by Baker group in CASP14. Installation Linux/Mac clone the package git clone https://github.com/RosettaCommons/trRosetta2cd trRosetta2 create conda environment using one of the .yml files: casp14-baker-linux-cpu.yml, casp14-baker-linux-gpu.yml, casp14-baker-mac-cpu.yml conda env create -f casp14-baker-linux-gpu.ymlconda activate casp14-baker download network weights [1.1G] wget https://files.ipd.uw.edu/pub/trRosetta2/weights.tar.bz2tar xf weights.tar.bz2 download and install third-party software ./install_dependencies.sh download sequence and structure databases wget http://wwwuser.gwdg.de/~compbiol/uniclust/2020_06/UniRef30_2020_06_hhsuite.tar.gzmkdir -p UniRef30_2020_06tar xf UniRef30_2020_06_hhsuite.tar.gz -C ./UniRef30_2020_06 wget https://files.ipd.uw.edu/pub/trRosetta2/pdb100_2020Mar11.tar.gztar xf pdb100_2020Mar11.tar.gz Obtain a PyRosetta licence and […]
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