A Python library and command line interface for training deep neural networks from biological sequence data such as genomes
Selene is a Python library and command line interface for training deep neural networks from biological sequence data such as genomes.
Please see our release notes for the latest updates to Selene.
Installation
We recommend using Selene with Python 3.6 or above. Package installation should only take a few minutes (less than 10 minutes, typically ~2-3 minutes) with any of these methods (conda, pip, source).
First, install PyTorch. If you have an NVIDIA GPU, install a version of PyTorch that supports it–Selene will run much faster with a discrete GPU. The library is currently compatible with PyTorch versions between 0.4.1 and 1.4.0. We will continue to update Selene to be compatible with the latest