Summarize LSF job properties by parsing log files
lsf_stats
Summarize LSF job properties by parsing log files of workflows executed by Snakemake.
Installation
$ pip install lsf_stats
Usage
$ lsf_stats --help
Usage: lsf_stats [OPTIONS] COMMAND [ARGS]...
Summarize LSF job properties by parsing log files.
Options:
--version Show the version and exit.
--help Show this message and exit.
Commands:
gather Aggregate information from log files in single dataframe.
summarize Summarize and visualize aggregated information.
Example
Assume that you executed your Snakemake workflow using the lsf-profile and all generated log files are stored in the directory ./logs/:
$ snakemake --profile lsf
[..]
You can then quickly aggregate resource, rule and other types of information about the workflow execution into a single dataframe:
$ lsf_stats gather -o workflow_stats.csv.gz