A Joint Sequence(1D)-Fold(3D) Embedding-based Generative Model for Protein Design
Fold2Seq [ICML2021] Fold2Seq: A Joint Sequence(1D)-Fold(3D) Embedding-based Generative Model for Protein Design Environment file: Data and Feature Generation: Go to data/ and check the README there. How to train the model: python train.py –data_path $path_to_the_data_dictionary –lr $learning_rate –model_save $path_to_the_saved_model How to generate sequences: python inference.py –trained_model $path_to_the_trained_model –output $path_to_the_output_file –data_path $path_to_the_data_dictionary Fold2Seq generated structures against natural structures: GitHub https://github.com/IBM/fold2seq
Read more