Command-line Tools

A CLI-based program that checks the file’s integrity

SHA-ZAM – Check the file hash sum Shazam is a Command Line Application that checks the integrity of one file by comparing it with a given hash. Created by: Anaxímeno Brito How Does It Work: It calculates the file’s hash sum and compares it with a given hash for checking if the file isn’t corrupted, it can also be used for calculating the hash sums and automatically save it inside one file if wanted. Shazam supports some of the most […]

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Automation

A library to make parallel selenium tests that automatically download

AutoParaSelenium A library to make parallel selenium tests that automatically download and setup webdrivers. Usage Installation pip install autoparaselenium Code The API is very simple from typing import Union from selenium import webdriver from autoparaselenium import configure, chrome, firefox, run_on, all_, Extension # All parameters are optional, but still call it once before everything configure( extensions=[ Extension(chrome=”path to chrome extension to install”), Extension(firefox=”path to firefox extension to install”), Extension(chrome=”chrome path”, firefox=”firefox path”) ], headless=True, # if there are chrome extensions, […]

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Scripts

Randomization-based inference in Python

resample Randomisation-based inference in Python based on data resampling and permutation. Features Bootstrap samples (ordinary or balanced with optional stratification) from N-D arrays Apply parametric bootstrap (Gaussian, Poisson, gamma, etc.) on samples Compute bootstrap confidence intervals (percentile or BCa) for any estimator Jackknife estimates of bias and variance of any estimator Permutation-based variants of traditional statistical tests (t-test, K-S test, etc.) Tools for working with empirical distributions (CDF, quantile, etc.) Dependencies Installation requires only numpy and scipy. Installation The latest […]

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App

Data sampling app to csv file with python

DATA SAMPLING APP The module that allows the collection of data sampling, which is transmitted with WebSocket via WIFI or serial port for CSV file. Technologies Warning To use this module, remember that data must be transmitted via serial port or WIFI in string where each data has to be separated by a comma. “00.0000000,00.0000000,00.0000000,00.0000000” Getting Started Fork this repository and clone it on your machine. Change the directory to python-data-sampling-app where you cloned it. Module Getting Started Install requirements. […]

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FastAPI

MeiliSearch FastAPI provides FastAPI routes for interacting with MeiliSearch

MeiliSearch FastAPI MeiliSearch FastAPI provides FastAPI routes for interacting with MeiliSearch. Installation Using a virtual environmnet is recommended for installing this package. Once the virtual environment is created and activated install the package with: pip install meilisearch-fastapi Useage Routes are split in groups so that different dependencies can be injected, and therefore different levels of access, can be given to different groups of routes. Example with no authentication require for routes from fastapi import APIRouter, FastAPI from meilisearch_fastapi.routes import ( […]

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Analysis

A reader and a writer of the ROOT file format using only Python and Numpy

Uproot is a reader and a writer of the ROOT file format using only Python and Numpy. Unlike the standard C++ ROOT implementation, Uproot is only an I/O library, primarily intended to stream data into machine learning libraries in Python. Unlike PyROOT and root_numpy, Uproot does not depend on C++ ROOT. Instead, it uses Numpy to cast blocks of data from the ROOT file as Numpy arrays. Installation Uproot can be installed from PyPI using pip (Awkward Array is optional […]

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Command-line Tools

A Python Package Helper command-line tool

pypahe Bonjour Software pypahe is a Python Package Helper command-line tool. Requirements Usage print the latest available version of a given package: docker run bonjoursoftware/pypahe latest boto3 print a given Pipfile or Poetry pyproject where all packages have been upgraded to their latest versions: docker run bonjoursoftware/pypahe upgrade “$(cat /path/to/package_config)” Tip: the Pipfile or Poetry pyproject file can be upgraded in place with: docker run bonjoursoftware/pypahe upgrade “$(cat /path/to/package_config)” > /path/to/package_config Tip: the –help argument also works on subcommands: docker […]

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Analysis

NNR and global probabilities estimation and analysis in peptides or protein fragments

nnr_probabilities_analysis NNR and global probabilities estimation and analysis in peptides or protein fragmentsThis module calculates global and NNR dependent probabilites in each peptide residue. First, workflow.sh bash script creates a workspace where results folder and dihedral angles .dat file are generated. After that, Python module obtains bidimensional arrays and probabilities about conformation population and structure combination independt and NNR dependent methods. Specifically, independent_arrays.py and conditional_arrays.py generate the 2d arrays where dihedral angles value in each point is contained. Later, this […]

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Music

An easy to use Spotify like app to manage and listen to your favorites musics

DeepMusic DeepMusic is an easy to use Spotify like app to manage and listen to your favorites musics. Technically, this project is an Android Client and its entire RPC / MOM backend. After being recorded, the input sequence is transcribed by the Android SpeechToText API provided natively on Android. Then, the transcription is provided to an homemade named entity recognition system which is done with Flair to identify semantic entities such like: Artist(s), Music Name, Order, … In response of […]

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Simulation

Simulate genealogical trees and genomic sequence data using population genetic models

msprime msprime is a population genetics simulator based on tskit. Msprime can simulate random ancestral histories for a sample of individuals (consistent with a given demographic model) under a range of different models and evolutionary processes. Msprime can also simulate mutations on a given ancestral history (which can be produced by msprime or other programs supporting tskit) under a variety of genome sequence evolution models. Please see the documentation for more details, including installation instructions. Research notice Please note that […]

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