A library for interacting with QuPath from Python
PAQUO: PAthological QUpath Obsession
Welcome to paquo wave, a library for interacting with QuPath from Python.
paquo’s goal is to provide a pythonic interface to important features of QuPath, and to make creating and working with QuPath projects intuitive for Python programmers.
We strive to make your lives as easy as possible: If paquo is not pythonic, unintuitive, slow or if its documentation is confusing, it’s a bug in paquo. Feel free to report any issues or feature requests in the issue tracker!
Development Installation
- Install conda and git
- Clone paquo
git clonehttps://github.com/bayer-science-for-a-better-life/paquo.git - Run
conda env create -f environment.yaml - Activate the environment
conda activate paquo
Note that in this environment paquo is already installed in development mode, so go ahead and hack.