Variational Bayesian phylogenetic inference (VBPI) provides a promising general variational framework for efficient estimation of phylogenetic posteriors. However, the current diagonal Lognormal branch length approximation would significantly restrict the quality of the approximating distributions… In this paper, we propose a new type of VBPI, VBPI-NF, as a first step to empower phylogenetic posterior estimation with deep learning techniques. By handling the non-Euclidean branch length space of phylogenetic models with carefully designed permutation equivariant transformations, VBPI-NF uses normalizing flows to provide […]

There has been an increased interest in discovering heuristics for combinatorial problems on graphs through machine learning. While existing techniques have primarily focused on obtaining high-quality solutions, scalability to billion-sized graphs has not been adequately addressed… In addition, the impact of a budget-constraint, which is necessary for many practical scenarios, remains to be studied. In this paper, we propose a framework called GCOMB to bridge these gaps. GCOMB trains a Graph Convolutional Network (GCN) using a novel probabilistic greedy mechanism […]

The ability to base current computations on memories from the past is critical for many cognitive tasks such as story understanding. Hebbian-type synaptic plasticity is believed to underlie the retention of memories over medium and long time scales in the brain… However, it is unclear how such plasticity processes are integrated with computations in cortical networks. Here, we propose Hebbian Memory Networks (H-Mems), a simple neural network model that is built around a core hetero-associative network subject to Hebbian plasticity. […]

The recent advances in image generation have been achieved by style-based image generators. Such approaches learn to disentangle latent factors in different image scales and encode latent factors as “style” to control image synthesis… However, existing approaches cannot further disentangle fine-grained semantics from each other, which are often conveyed from feature channels. In this paper, we propose a novel image synthesis approach by learning Semantic-aware relative importance for feature channels in Generative Adversarial Networks (SariGAN). Such a model disentangles latent […]

Correlative microscopy aims at combining two or more modalities to gain more information than the one provided by one modality on the same biological structure. Registration is needed at different steps of correlative microscopies workflows… Biologists want to select the image content used for registration not to introduce bias in the correlation of unknown structures. Intensity-based methods might not allow this selection and might be too slow when the images are very large. We propose an approach based on point […]

The current evaluation protocol of long-tailed visual recognition trains the classification model on the long-tailed source label distribution and evaluates its performance on the uniform target label distribution. Such protocol has questionable practicality since the target may also be long-tailed… Therefore, we formulate long-tailed visual recognition as a label shift problem where the target and source label distributions are different. One of the significant hurdles in dealing with the label shift problem is the entanglement between the source label distribution […]

The Learnable Tree Filter presents a remarkable approach to model structure-preserving relations for semantic segmentation. Nevertheless, the intrinsic geometric constraint forces it to focus on the regions with close spatial distance, hindering the effective long-range interactions… To relax the geometric constraint, we give the analysis by reformulating it as a Markov Random Field and introduce a learnable unary term. Besides, we propose a learnable spanning tree algorithm to replace the original non-differentiable one, which further improves the flexibility and robustness. […]

We present a new package for Mathematica system, called Libra. Its purpose is to provide convenient tools for the transformation of the first-order differential systems $partial_i boldsymbol j = M_i boldsymbol j$ for one or several variables… In particular, Libra is designed for the reduction to $epsilon$-form of the differential systems which appear in multiloop calculations. The package also contains some tools for the construction of general solution: both via perturbative expansion of path-ordered exponent and via generalized power series […]